Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009778: Enterobacter sakazakii ATCC BAA-894, complete genome

NCBI: NC_009778

Host Lineage: Cronobacter sakazakii; Cronobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes septicemia and enterocolitis in infants. Cronobacter sakazakii formerly Enterobacter sakazakii, is associated with infant septicemia, meningitis, and necrotizing enterocolitis. Originally isolated from powdered formula, it has also been shown to compartmentalize cerebral ventricles and cause brain abcesses in neonates. This species produces a yellow pigment when grown at 30 degrees C, but this fades at 37 degrees C.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1259241*28824029000Island text2.0438138.168234.6247Neighbours41BLASTNIslandViewer 259241.gbk
256700060530938310Island text2.0437637.498229.1725Neighbours41BLASTNIslandViewer 567000.gbk
395998298509925118Island text1.6976434.958329.2442Neighbours41BLASTNIslandViewer 959982.gbk
41070000109309923100Island text2.2854842.021828.7088Neighbours41BLASTNIslandViewer 1070000.gbk
51141716117336531650Island text4.1721748.592425.4163Neighbours51BLASTNIslandViewer 1141716.gbk
61222273124884426572Island text2.1030438.329520.4486Neighbours41BLASTNIslandViewer 1222273.gbk
71477841150009922259Island text1.3657732.672724.0224Neighbours41BLASTN1477841.gbk
81556222158809931878Island text3.2149944.450425.6413Neighbours51BLASTNIslandViewer 1556222.gbk
91717458175914341686Island text1.62336.524525.1192Neighbours41BLASTNIslandViewer 1717458.gbk
101902995192149318499Island text1.5494835.159329.8818Neighbours51BLASTN1902995.gbk
111956225198255126327Island text2.4029942.021733.9842Neighbours41BLASTNIslandViewer 1956225.gbk
122227627*228586658240Island text4.1028358.561527.3963BLASTNIslandViewer 2227627.gbk
132951207297908827882Island text3.3618745.89423.0099Neighbours41BLASTNIslandViewer 2951207.gbk
142993218302409930882Island text1.6063232.047645.5205Neighbours41BLASTNIslandViewer 2993218.gbk
153287693330930421612Island text1.6973234.087223.6854Neighbours41BLASTN3287693.gbk
163454790347478019991Island text1.4664536.758329.7661Neighbours51BLASTN3454790.gbk
173832000386183229833Island text3.297445.490230.775Neighbours51BLASTN3832000.gbk
184014026404423330208Island text1.6552436.140429.3809Neighbours41BLASTNIslandViewer 4014026.gbk
194188000423044042441Island text1.8076443.359326.9859Neighbours41BLASTNIslandViewer 4188000.gbk