Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009776: Ignicoccus hospitalis KIN4/I, complete genome

NCBI: NC_009776

Host Lineage: Ignicoccus hospitalis; Ignicoccus; Desulfurococcaceae; Desulfurococcales; Crenarchaeota; Archaea

General Information: Ignicoccus hospitalis Kin4/I was isolated from gravel obtained from the shallow marine hydrothermal system of the Kolbeinsey Ridge, north of Iceland. Hyperthermophilic archaeon. Ignicoccus hospitalis, an anaerobic, hyperthermophilic, chemoautolithotroph, uses hydrogen to reduce elemental sulfur and produce hydrogen sulfide. This organism is also moderately halophilic and acidophilic. Ignicoccus hospitalis is the host organism for Nanoarchaeum equitans.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1157311*17588818578Island text1.5269925.632343.5559Neighbours20BLASTN+157311.gbk
261753263902821497Island text1.5699327.300244.0939Neighbours20BLASTN617532.gbk
3707785*73109923315Island text2.0575339.150232.7735Neighbours20BLASTN707785.gbk
4941964*96794225979Island text1.4228634.016324.7899Neighbours20BLASTN+941964.gbk
51249350*127148922140Island text1.8000726.95941.3794Neighbours20BLASTN1249350.gbk