Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009725: Bacillus amyloliquefaciens FZB42, complete genome

NCBI: NC_009725

Host Lineage: Bacillus amyloliquefaciens; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Bacillus amyloliquefaciens strain FZB42 was isolated from soil, and is a member of a group of free-living soil bacteria known to promote plant growth and suppress plant pathogens. Plant growth promoting bacterium. Bacillus amyloliquefaciens is a member of a group of free-living soil bacteria known to promote plant growth and suppress plant pathogens. Bacillus amyloliquefaciens is able to degrade myo-inositol hexakisphosphate (phytate), making phosphorus more available to plants. This organism also produces antifungal and antibacterial substances, such as bacillomycin D, surfactin, and bacillaene, which protect the plant from pathogenic organisms. In addition, proteases and amylases produced by Bacillus amyloliquefaciens are used in industrial applications.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
120007122585125781Island text3.2809836.139923.1739Neighbours21BLASTN+200071.gbk
2496443*54991253470Island text2.2439235.400220.4681Neighbours21BLASTN496443.gbk
369223774659954363Island text3.2815437.587323.5971Neighbours21BLASTN+IslandViewer 692237.gbk
41159637*118492325287Island text2.0000234.584821.5114Neighbours21BLASTNIslandViewer 1159637.gbk
51787262182535038089Island text1.8353232.961718.5593Neighbours21BLASTN1787262.gbk
62072475210493832464Island text1.9850335.705421.8184Neighbours21BLASTNIslandViewer 2072475.gbk
72517428254041822991Island text1.6497429.067417.4443Neighbours21BLASTN2517428.gbk
82784334280759923266Island text1.9774933.677227.88Neighbours21BLASTN+2784334.gbk
92859630290030340674Island text4.2380140.737822.6761Neighbours21BLASTNIslandViewer 2859630.gbk
103447336347083123496Island text2.3366235.299130.8217Neighbours31BLASTNIslandViewer 3447336.gbk
113559257357877419518Island text1.691729.973213.54Neighbours31BLASTN+3559257.gbk
123602632362409921468Island text1.8354532.11225.0556Neighbours31BLASTN+3602632.gbk
133763922378373119810Island text1.6571830.165421.3744Neighbours24BLASTN+3763922.gbk
143809403383765528253Island text3.920238.085725.5817Neighbours21BLASTN3809403.gbk
153878862390618227321Island text2.3668936.279214.8771Neighbours21BLASTN3878862.gbk