Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009720: Xanthobacter autotrophicus Py2, complete genome

NCBI: NC_009720

Host Lineage: Xanthobacter autotrophicus; Xanthobacter; Xanthobacteraceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Alkene-degrading bacterium. Xanthobacter autotrophicus is a nitrogen-fixing methylotroph, commonly isolated from organic rich soil, sediment and water. This organism uses an alkene-specific monooxygenase to convert propene to epoxypropane. This monooxygenase is also able to catalyze the initial step in the cometabolism of chlorinated alkenes such as vinyl chloride and trichloroethene. The Xanthobacter autotrophicus alkene monooxygenase and other genes involved in alkene degradation are located on a 320 kb megaplasmid.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1216589*24097524387Island text1.6750719.487415.1181Neighbours11BLASTN+IslandViewer 216589.gbk
2251703*27963127929Island text1.6007120.407514.09Neighbours11BLASTN+IslandViewer 251703.gbk
346407848874724670Island text1.5369418.470316.3479Neighbours11BLASTN+464078.gbk
4583060*60772824669Island text1.5061319.89313.0588Neighbours11BLASTN+IslandViewer 583060.gbk
562226265580233541Island text2.4264223.59618.3188Neighbours11BLASTN+IslandViewer 622262.gbk
667085369197421122Island text1.7741217.448918.1691Neighbours11BLASTN+IslandViewer 670853.gbk
775061278422333612Island text1.6296818.216721.342Neighbours11BLASTN+IslandViewer 750612.gbk
881315783515121995Island text1.7112121.694616.8738Neighbours11BLASTN+IslandViewer 813157.gbk
987019489166821475Island text1.5081818.470318.2604Neighbours11BLASTN+IslandViewer 870194.gbk
1090088492712426241Island text1.4722821.291316.9509Neighbours11BLASTN+IslandViewer 900884.gbk
111006201*103109924899Island text2.9863220.915822.689Neighbours11BLASTN1006201.gbk
121248866127253723672Island text1.7072618.295816.6159Neighbours11BLASTN+IslandViewer 1248866.gbk
132143124*216762924506Island text3.4359923.025627.3896Neighbours11BLASTN2143124.gbk
142424975*244520720233Island text1.5304719.593120.0024Neighbours11BLASTN2424975.gbk
152489003*251980530803Island text2.06522.943419.3093Neighbours11BLASTN+IslandViewer 2489003.gbk
162945655*296659920945Island text1.5053821.394717.7752Neighbours11BLASTN+IslandViewer 2945655.gbk
173210387322809917713Island text1.4985821.996614.7826Neighbours11BLASTN+IslandViewer 3210387.gbk
183281000*330704926050Island text1.8890318.282816.1375Neighbours11BLASTN3281000.gbk
193317642334276225121Island text1.3656818.421718.7782Neighbours11BLASTNIslandViewer 3317642.gbk
203377071339802320953Island text1.5216419.949222.1373Neighbours11BLASTN+IslandViewer 3377071.gbk
213968101399101722917Island text1.7537118.47927.2117Neighbours11BLASTN3968101.gbk
224033983*407011036128Island text1.7969220.370222.8693Neighbours11BLASTN+IslandViewer 4033983.gbk
234087831*410653818708Island text1.54717.459115.1267Neighbours11BLASTN+IslandViewer 4087831.gbk
244124255415127427020Island text2.2226923.028522.3976Neighbours11BLASTN+IslandViewer 4124255.gbk
254367584439276525182Island text1.479319.765314.5146Neighbours11BLASTN+4367584.gbk
264406991444791640926Island text2.0273723.097721.8864Neighbours11BLASTN+IslandViewer 4406991.gbk
275046861*507080323943Island text1.4480420.142317.6514Neighbours11BLASTN+IslandViewer 5046861.gbk
285079048510209923052Island text1.5472417.619211.5605Neighbours11BLASTN+IslandViewer 5079048.gbk