Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009719: Parvibaculum lavamentivorans DS-1 chromosome, complete genome

NCBI: NC_009719

Host Lineage: Parvibaculum lavamentivorans; Parvibaculum; Rhodobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: An aerobic, non-motile, Gram-negative, short rod. It is motile when growing with acetate, octane or in complex medium. It is able to metabolize a wide range of anionic and non-ionic surfactants and utilizes all representatives of the two major classes of surfactants used in laundry products in Germany, anionics and non-ionics. The epithet "lavamentivorans" stands for "consuming (chemicals) used for washing". Parvibaculum lavamentivorns is able to degrade linear alkylbenzenesulfonate and other surfactants making this organism useful in industrial and bioremediation applications. Strain DS-1 was enriched from a sewage treatment plant.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1336000*35809922100Island text1.6377126.677623.4275Neighbours11BLASTN+IslandViewer 336000.gbk
21135523*116558530063Island text1.7696629.74625.9251Neighbours11BLASTN+IslandViewer 1135523.gbk
31972545199073818194Island text1.9581226.880430.4309Neighbours11BLASTNIslandViewer 1972545.gbk
43532587*356621833632Island text1.5001124.781119.3263Neighbours11BLASTNIslandViewer 3532587.gbk