Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009718: Fervidobacterium nodosum Rt17-B1, complete genome

NCBI: NC_009718

Host Lineage: Fervidobacterium nodosum; Fervidobacterium; Thermotogaceae; Thermotogales; Thermotogae; Bacteria

General Information: Fervidobacterium nodosum is a thermophilic, Gram-negative, motile, non-sporulating, glycolytic, obligately anaerobic rod that exists singly, in pairs or in chains. Fervidobacterium nodosum was isolated from a hot spring in New Zealand. Its optimal growth temperature is 65 to 70 degrees Celsius. The cellular morphology of this organism, a member of the Thermotogales, is characterized by a terminal spherical extension of the cell envelope.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
120399822257418577Island text2.4128418.588937.9401Neighbours21BLASTN203998.gbk
251887354121822346Island text1.5431419.279535.2201Neighbours21BLASTN+IslandViewer 518873.gbk
357929160107221782Island text1.7224419.517337.1734Neighbours21+579291.gbk
4643200*68474241543Island text2.0913718.744736.1164Neighbours21BLASTN+643200.gbk
5731670*75599424325Island text1.8128117.75639.3349Neighbours21BLASTN+731670.gbk
6799431*82058821158Island text1.8809718.248428.2556Neighbours21BLASTN+799431.gbk
71024000104709023091Island text1.7060418.01234.3891Neighbours21BLASTN+1024000.gbk
81183816*120664022825Island text1.7239420.160531.5386Neighbours21BLASTN+1183816.gbk
91207360*123801130652Island text2.5814521.845442.5074Neighbours21BLASTN+1207360.gbk
101272296*129807825783Island text2.5847836.201444.8983Neighbours21BLASTN+1272296.gbk
111411793143505823266Island text1.9817714.597538.5248Neighbours21BLASTN+1411793.gbk
121470972151120940238Island text1.9567819.58738.1297Neighbours21BLASTNIslandViewer 1470972.gbk
131736300175409917800Island text1.6564219.078325.2101Neighbours21BLASTN+1736300.gbk
141771500179295021451Island text2.2439819.493840.1425Neighbours21BLASTN+IslandViewer 1771500.gbk