Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009714: Campylobacter hominis ATCC BAA-381, complete genome

NCBI: NC_009714

Host Lineage: Campylobacter hominis; Campylobacter; Campylobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: Campylobacter hominis ATCC BAA-381 was isolated from the feces of a healthy human. Members of this genus are one of the most common causes of bacterial gastroenteritis (campylobacteriosis). Usually the symptoms are abdominal pain, fever, diarrhea, and cramps, but the illness can sometimes be fatal and some infected individuals develop a syndrome (Guillain-Barre) in which the nerves connecting the spinal cord to the brain are damaged. C. jejuni is the main cause of campylobacteriosis, but other species can also cause infection, including C. coli, C. upsaliensis, and C. concisus. Campylobacter hominis. This is the only known species of Campylobacter that is not pathogenic to humans.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
174500*9746522966Island text1.6003417.95629.8489Neighbours18BLASTN74500.gbk
211397515447240498Island text3.0637916.382328.6832Neighbours21BLASTN+IslandViewer 113975.gbk
3224325*26606341739Island text1.7358321.041635.8267Neighbours21BLASTN+224325.gbk
426509828880623709Island text2.0063215.445627.5308Neighbours21+265098.gbk
529247031232319854Island text1.7603815.910721.3668Neighbours21BLASTN+292470.gbk
653401555405420040Island text1.5574616.617223.4971Neighbours21534015.gbk
767189769420322307Island text1.5257518.269726.4709Neighbours21IslandViewer 671897.gbk
8727679*74815820480Island text1.8051117.28625.6292Neighbours21BLASTN727679.gbk
91084000110759423595Island text1.7846914.950124.266Neighbours21BLASTN+1084000.gbk
101118500113955121052Island text1.5798618.479929.7661Neighbours21BLASTN1118500.gbk
111329573*135524325671Island text1.7235722.36733.0374Neighbours21BLASTN1329573.gbk
121367775138637518601Island text2.1254416.327223.0905Neighbours211367775.gbk
131404000142704323044Island text1.8159415.694918.3335Neighbours21BLASTN+1404000.gbk
141576401*159413417734Island text1.4947916.506625.0944Neighbours21BLASTN1576401.gbk