Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009712: Candidatus Methanoregula boonei 6A8, complete genome

NCBI: NC_009712

Host Lineage: Methanoregula boonei; Methanoregula; Methanoregulaceae; Methanomicrobiales; Euryarchaeota; Archaea

General Information: Acidophilic methanogen. Candidatus Methanoregula boonei was isolated from an acidic peat bog in New York State, USA. This organism is acidophilic with an optimum pH of 5 and pH range between 4 and 6.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
133414336872234580Island text2.3889745.527620.5036Neighbours38BLASTNIslandViewer 334143.gbk
2669647*70345833812Island text1.9251438.610125.2358Neighbours38BLASTN+669647.gbk
31008000103148523486Island text1.361133.189421.9637Neighbours38BLASTN1008000.gbk
41185301121082525525Island text1.7421542.447324.7793Neighbours38BLASTNIslandViewer 1185301.gbk
51446472*147114224671Island text1.7199543.641632.5842Neighbours38BLASTN+1446472.gbk
61667809169136723559Island text1.4217631.2551.6994Neighbours38BLASTN1667809.gbk
71822375185409931725Island text2.1752842.342219.8504Neighbours38BLASTN+IslandViewer 1822375.gbk
82092440211715724718Island text1.8824540.765320.7141Neighbours38BLASTN2092440.gbk
92362218*238380321586Island text1.5987141.043618.0368Neighbours38BLASTN2362218.gbk