Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009707: Campylobacter jejuni subsp. doylei 269.97 chromosome, complete

NCBI: NC_009707

Host Lineage: Campylobacter jejuni; Campylobacter; Campylobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: Isolated from a blood sample of human bacteremia in South Africa. Causes food poisoning. This organism is the leading cause of bacterial food poisoning (campylobacteriosis) in the world, and is more prevalent than Salmonella enteritis (salmonellosis). Found throughout nature, it can colonize the intestines of both mammals and birds, and transmission to humans occurs via contaminated food products. This organism can invade the epithelial layer by first attaching to epithelial cells, then penetrating through them. Systemic infections can also occur causing more severe illnesses



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
136024*5596519942Island text1.6392715.173127.078Neighbours21BLASTN36024.gbk
228100029984718848Island text1.8229914.59330.0869Neighbours21BLASTN+IslandViewer 281000.gbk
3980000*100245222453Island text2.2420913.71929.4128Neighbours21BLASTN+980000.gbk
41338742*136222623485Island text2.2542721.043738.0497Neighbours21BLASTN+IslandViewer 1338742.gbk
51551412156932217911Island text1.6118613.56715.0993Neighbours21BLASTN+1551412.gbk
61685381171074325363Island text1.4865917.9930.2107Neighbours21BLASTN+1685381.gbk
71811650*183848826839Island text1.7608516.712131.5825Neighbours21BLASTN1811650.gbk