Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009706: Clostridium kluyveri DSM 555 chromosome, complete genome

NCBI: NC_009706

Host Lineage: Clostridium kluyveri; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: Involved in production of caproic acid in co-culture with a methanogen. This species was enriched from mud in a co-culture with Methanobacterium omelianskii. When grown on ethanol C. kluyveri produce caproic acid in addition to acetic acid. This organism is able to grow anaerobically on ethanol and acetate as sole energy sources.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*1866018660Island text5.1719627.652353.3089Neighbours21BLASTN1.gbk
2560007809922100Island text1.7483324.77528.8768Neighbours21BLASTN+IslandViewer 56000.gbk
3165913*18739921487Island text4.0920326.717747.0227Neighbours21BLASTN165913.gbk
423816027486436705Island text2.8880240.645833.3242Neighbours32BLASTN+IslandViewer 238160.gbk
583046187121440754Island text3.671426.031346.7098Neighbours21BLASTN+830461.gbk
6950000*97495924960Island text3.5090925.715146.0821Neighbours21BLASTN+950000.gbk
71935418195596420547Island text2.3036324.968742.0494Neighbours21+1935418.gbk
81972000199213520136Island text3.8540625.15245.1638Neighbours21BLASTN+1972000.gbk
92003194202309919906Island text2.4503625.42841.9585Neighbours21+2003194.gbk
102023912206009936188Island text3.0489123.333443.193Neighbours21BLASTN+2023912.gbk
112673906273453660631Island text3.323628.6932.0981Neighbours21BLASTN+IslandViewer 2673906.gbk
122925000294722022221Island text2.2519630.040127.881Neighbours21BLASTN+IslandViewer 2925000.gbk
133291330333174940420Island text2.1893323.361937.54Neighbours21BLASTN+IslandViewer 3291330.gbk
143341250336255321304Island text4.1924825.136247.5104Neighbours21BLASTN3341250.gbk
153845039*386748822450Island text3.6278827.628144.1028Neighbours344BLASTN+3845039.gbk
163882500*395109968600Island text3.3441943.164527.9578Neighbours23BLASTN+IslandViewer 3882500.gbk