Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009675: Anaeromyxobacter sp. Fw109-5 chromosome, complete genome

NCBI: NC_009675

Host Lineage: Anaeromyxobacter; Anaeromyxobacter; Myxococcaceae; Myxococcales; Proteobacteria; Bacteria

General Information: Anaeromyxobacter Fw109-5 is a mesophilic, iron-reducing bacterium that was recently isolated from subsurface sediments (approximately 15 m) at the ERSP-FRC in Oak Ridge, TN, USA.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
12177500*219621618717Island text1.4894814.263121.5353Neighbours11BLASTN2177500.gbk
22515669*253592120253Island text1.5009515.220726.6719Neighbours18BLASTN2515669.gbk
32623339265483631498Island text1.6616712.802818.1313Neighbours8IslandViewer 2623339.gbk
43067567309073123165Island text3.5899614.608722.1403Neighbours11BLASTN+IslandViewer 3067567.gbk
54281249430415822910Island text2.0712112.339211.5072Neighbours11BLASTN+4281249.gbk
64644173467604231870Island text1.9098810.13816.7986Neighbours11BLASTNIslandViewer 4644173.gbk
75187452520775120300Island text1.543410.937511.396Neighbours11BLASTNIslandViewer 5187452.gbk