Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009674: Bacillus cytotoxicus NVH 391-98 chromosome, complete genome

NCBI: NC_009674

Host Lineage: Bacillus cytotoxicus; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Isolated from a food poisoning outbreak in a nursing home for elderly people in France in March 1998. Under starvation conditions this group of bacteria initiate a pathway that leads to endospore formation, a process that is thoroughly studied and is a model system for prokaryotic development and differentiation. Spores are highly resistant to heat, cold, dessication, radiation, and disinfectants, and enable the organism to persist in otherwise inhospitable environments. Under more inviting conditions the spores germinate to produce vegetative cells. Bacillus cytotoxicus is a member of the Bacillus cereus group, which represents sporulating soil bacteria containing pathogenic strains which may cause food poisoning outbreaks.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
184000086351223513Island text3.0553526.314847.406Neighbours21BLASTN+IslandViewer 840000.gbk
21707944*173078022837Island text4.1711230.172155.315Neighbours21BLASTN+1707944.gbk
32551759*257170419946Island text2.0517227.443139.0606Neighbours21BLASTN2551759.gbk
42624817*264718122365Island text3.0204124.828844.5351Neighbours21BLASTN2624817.gbk
52678932*270546626535Island text3.6581831.332849.6887Neighbours21BLASTN+2678932.gbk
62923707294238018674Island text4.2425333.145549.6582Neighbours21BLASTN2923707.gbk
72985878301949933622Island text3.0076733.391446.7746Neighbours21BLASTN+2985878.gbk
83073564*309613022567Island text2.7196120.12437.4102Neighbours21BLASTN3073564.gbk
93344000336192617927Island text1.6297419.658937.6355Neighbours21BLASTN3344000.gbk
103732000*375461622617Island text1.6025822.18231.6177Neighbours21BLASTN3732000.gbk
113863667388613922473Island text1.5826921.944935.9179Neighbours21BLASTN+3863667.gbk
123903893*392244818556Island text2.1919920.50537.7745Neighbours21BLASTN3903893.gbk