Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009668: Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequence

NCBI: NC_009668

Host Lineage: Ochrobactrum anthropi; Ochrobactrum; Brucellaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Soil bacterium that can cause opportunistic infections. Ochrobactrum anthropi is an opportunistic human pathogen usually causing infection in association with indwelling medical devices, such as catheters and drainage tubes. This organism and related species have also been isolated from soil, activated sludge, and plants. Ochrobactrum anthropi is a Gram-negative, anaerobic, motile bacterium. A common soil bacteria, it was originally considered as an opportunistic pathogen, causing infections in immunocompromised patients, patients with indwelling catheters or peritoneal dialysis but it is now emerging as a more and more important nosocomial pathogen. The first case of human infection was described in 1980. It has been isolated from blood, the urogenital tract, respiratory tract and eyes, and it can be part of the normal intestinal flora. It is resistant to many antibiotics, especially the beta-lactams.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1460106559919590Island text1.6333834.29644.6644Neighbours11BLASTN+46010.gbk
2445134*51474969616Island text1.7362226.87723.3887Neighbours11BLASTN+IslandViewer 445134.gbk
352917554876219588Island text1.5486325.749816.0109Neighbours11BLASTN+IslandViewer 529175.gbk
4594500*62259928100Island text1.9565837.079428.9029Neighbours11BLASTN+IslandViewer 594500.gbk
51591290*161420122912Island text1.6736131.023545.1669Neighbours11BLASTN+1591290.gbk
61726000*174753121532Island text1.4977429.166826.7331Neighbours11BLASTN+IslandViewer 1726000.gbk