Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009665: Shewanella baltica OS185 chromosome, complete genome

NCBI: NC_009665

Host Lineage: Shewanella baltica; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: A psychrophilic bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This species is differentiated from other Shewanella spp. based on its ability to grow at 4 degrees C but not at 37, production of N-acetyl-beta-glucosaminidase, lack of chymotrypsin, and ability to use a variety of complex carbon compounds as carbon and energy sources.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1593359*61409920741Island text1.6644531.313852.7287Neighbours42BLASTN+593359.gbk
263991466872928816Island text1.606836.101753.152Neighbours21BLASTN+IslandViewer 639914.gbk
369347872297929502Island text1.5120729.95251.611Neighbours21BLASTN+IslandViewer 693478.gbk
41332751*135626223512Island text2.7624531.159822.5569Neighbours21BLASTNIslandViewer 1332751.gbk
51495473*151809922627Island text1.91128.742124.9482Neighbours21BLASTN1495473.gbk
61831674185555423881Island text3.8992633.744317.537Neighbours21BLASTN+IslandViewer 1831674.gbk
72219082223709918018Island text1.6131138.006954.3569Neighbours21BLASTN+IslandViewer 2219082.gbk
82352528237535822831Island text2.1044930.099930.9416Neighbours21BLASTNIslandViewer 2352528.gbk
92602000262374321744Island text1.7182327.754141.4301Neighbours21BLASTNIslandViewer 2602000.gbk
103460906349346632561Island text1.7264927.121822.3413Neighbours21BLASTN+IslandViewer 3460906.gbk
113869904389632226419Island text1.9809529.061315.4282Neighbours21BLASTN+IslandViewer 3869904.gbk
123984080400617222093Island text2.0125130.133921.7982Neighbours21BLASTN+IslandViewer 3984080.gbk
134675289*469836023072Island text1.5821528.337821.5373Neighbours42BLASTN4675289.gbk
145072413511445442042Island text1.5102433.420551.2121Neighbours21BLASTN+IslandViewer 5072413.gbk