Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009663: Sulfurovum sp. NBC37-1, complete genome

NCBI: NC_009663

Host Lineage: Sulfurovum; Sulfurovum; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This strain was isolated from a deep-sea hydrothermal vent in the Iheya North field in the Mid-Okinawa Trough, Japan as part of a larger diversity study. This rod-shaped bacterium grows chemolithoautotrophically and can utilize a wide spectrum of electron donors and acceptors (i.e. hydrogen, sulfur compounds, nitrate and oxygen). It can occupy different ecological niches, and its metabolic versatility probably enables it to adapt to the geochemical variability in deep-sea hydrothermal environments.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
189224*10955520332Island text2.1295329.201124.429Neighbours21BLASTNIslandViewer 89224.gbk
2738846*76642527580Island text3.7072532.264524.4899NeighboursBLASTN+IslandViewer 738846.gbk
385114387455423412Island text1.486336.879940.5531Neighbours354+851143.gbk
494628596580519521Island text2.0529229.824928.9058Neighbours21BLASTN+IslandViewer 946285.gbk
5982048100544623399Island text1.5606930.862143.5513Neighbours354BLASTN982048.gbk
61237336126092423589Island text1.6343735.557539.4232Neighbours354BLASTN1237336.gbk
71656804167976622963Island text2.5159630.15225.5255Neighbours21BLASTN+IslandViewer 1656804.gbk
82023941*204367419734Island text1.7132830.638528.5483Neighbours21BLASTN+IslandViewer 2023941.gbk
92056166207528319118Island text1.4290134.976933.9749Neighbours354BLASTN2056166.gbk
102089268211515925892Island text2.2596631.199344.2302Neighbours21BLASTNIslandViewer 2089268.gbk
112156206217597519770Island text1.6132329.762952.7272Neighbours354BLASTN+2156206.gbk
122184594220387119278Island text2.4017628.81216.756Neighbours21+IslandViewer 2184594.gbk
132363841238170017860Island text1.5019929.681429.7539Neighbours354BLASTN+2363841.gbk
142478311249723118921Island text1.6292536.191348.8233BLASTN2478311.gbk
152500186*252039120206Island text1.8615730.263946.5693Neighbours354BLASTN+IslandViewer 2500186.gbk
162531876255610824233Island text2.3284229.681426.4512Neighbours21BLASTN+IslandViewer 2531876.gbk