Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009662: Nitratiruptor sp. SB155-2, complete genome

NCBI: NC_009662

Host Lineage: Nitratiruptor; Nitratiruptor; Nautiliaceae; Nautiliales; Proteobacteria; Bacteria

General Information: This strain was isolated from a deep-sea hydrothermal vent in the Iheya North field in the Mid-Okinawa Trough, Japan as part of a larger diversity study. This rod-shaped bacterium grows chemolithoautotrophically and can utilize a wide spectrum of electron donors and acceptors (i.e. hydrogen, sulfur compounds, nitrate and oxygen). It can occupy different ecological niches, and its metabolic versatility probably enables it to adapt to the geochemical variability in deep-sea hydrothermal environments.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1222964*26489641933Island text1.8392922.928136.6763Neighbours21BLASTN222964.gbk
2276287*29775521469Island text1.5289524.574437.0285Neighbours21BLASTN276287.gbk
3383381*40149218112Island text2.1100926.87541.5013Neighbours21BLASTN383381.gbk
4455139*48003124893Island text1.7141327.02542.9913Neighbours21BLASTN+IslandViewer 455139.gbk
5645871*66758221712Island text2.4484234.31149.0403Neighbours21BLASTN645871.gbk
6837500*86461227113Island text1.7149925.120740.5246Neighbours21BLASTN+837500.gbk
71285826*130815922334Island text1.4279325.462134.5718Neighbours370BLASTN1285826.gbk
81329788*135163221845Island text1.5566825.019836.0077Neighbours21BLASTN+IslandViewer 1329788.gbk
91849239*187161722379Island text2.0964835.736951.7176Neighbours21BLASTN1849239.gbk