Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009659: Janthinobacterium sp. Marseille chromosome, complete genome

NCBI: NC_009659

Host Lineage: Janthinobacterium; Janthinobacterium; Oxalobacteraceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Freshwater-borne small bacterium. This organism, also called Minibacterium massiliensis, was isolated from a solution used in kidney dialysis. Hemodialysis water.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111432214322Island text1.7292231.145324.8158BLASTNIslandViewer 1.gbk
2543000*56534422345Island text1.8269435.596953.7512Neighbours11BLASTN+IslandViewer 543000.gbk
3892272*92535433083Island text1.7608934.185930.673Neighbours46BLASTN+IslandViewer 892272.gbk
4997779*102163323855Island text1.9554536.743154.5194Neighbours11BLASTN+IslandViewer 997779.gbk
51024201*104886224662Island text2.8972342.197620.6101Neighbours17BLASTN1024201.gbk
61050532112757177040Island text1.5949129.213327.9571Neighbours17BLASTN+IslandViewer 1050532.gbk
71129066116326834203Island text1.7036932.394327.6021Neighbours17BLASTN+IslandViewer 1129066.gbk
81923925197482650902Island text1.8962434.896323.3213Neighbours46BLASTN+IslandViewer 1923925.gbk
91984980202606541086Island text1.9487834.559828.1875Neighbours17BLASTN+IslandViewer 1984980.gbk
102523874256391740044Island text1.6026530.910526.7927Neighbours44BLASTN+IslandViewer 2523874.gbk
112849000*287764928650Island text1.9191135.20226.0324Neighbours46BLASTN+IslandViewer 2849000.gbk
123103601312729023690Island text2.1955136.482439.7397Neighbours11BLASTN+IslandViewer 3103601.gbk
133384997341599230996Island text2.8373644.590924.036Neighbours46BLASTN+IslandViewer 3384997.gbk
143520093*355223532143Island text1.5626329.693620.778Neighbours44BLASTN+IslandViewer 3520093.gbk
153815966384121625251Island text1.8826134.771822.3562Neighbours17BLASTNIslandViewer 3815966.gbk