Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009655: Actinobacillus succinogenes 130Z chromosome, complete genome

NCBI: NC_009655

Host Lineage: Actinobacillus succinogenes; Actinobacillus; Pasteurellaceae; Pasteurellales; Proteobacteria; Bacteria

General Information: Succinate-producing bacterium. Originally isolated from bovine rumen, this species is one of the most promising succinate producers known. It can utilize a variety of sugars and produce a very high volume of succinate, which is used by the pharmaceutical industry. This organism has been improved over time by growth on fermentable carbon and sodium monofluoroacetate and selection of fluoroacetate-resistant mutants which have a higher succinate yield. The succinate yield has also been improved via a metabolic engineering approach, by cloning and overproducing the PEP-carboxykinase gene which catalyzes the addition of carbon dioxide to PEP to form oxalacetate and can work physiologically in both directions

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1195500*22290527406Island text1.5370728.903244.908Neighbours35BLASTN+195500.gbk
286628190005033770Island text1.9160529.748624.898Neighbours35BLASTN866281.gbk
31083639110798024342Island text1.6112632.204554.6778Neighbours35BLASTN+1083639.gbk
41357486*137918021695Island text3.2729129.751220.9073Neighbours41BLASTN+IslandViewer 1357486.gbk
51626466164415717692Island text1.6526530.10452.7927Neighbours330BLASTN1626466.gbk
62148433*216893420502Island text1.8209626.85644.9476Neighbours35BLASTN+2148433.gbk