Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009637: Methanococcus maripaludis C7 chromosome, complete genome

NCBI: NC_009637

Host Lineage: Methanococcus maripaludis; Methanococcus; Methanococcaceae; Methanococcales; Euryarchaeota; Archaea

General Information: Anaerobic methane-producing archeon. This strain was isolated from intertidal salt-marsh sediments. Methanococcus maripaludis is an obligately anaerobic, mesophilic, methane-producing archaeon. Growth on hydrogen and carbon dioxide results in the production of methane as a waste product. M. maripaludis stands out among methanogenic archaea as an ideal model species because of fast reproducible growth and effective genetic tools.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1302881*32916426284Island text1.7478425.26432.9816Neighbours21BLASTN+302881.gbk
2438037*47921241176Island text1.4694423.1630.679Neighbours21BLASTN+438037.gbk
3602079*63063528557Island text1.948124.064938.8449Neighbours21BLASTN+602079.gbk
4646092*66920123110Island text2.1957621.036938.138Neighbours21BLASTN646092.gbk
5774358*79947625119Island text1.8088228.246233.2784Neighbours21BLASTN774358.gbk
6920423*94363623214Island text1.9701725.569131.2109Neighbours21BLASTN920423.gbk
71421885144259920715Island text4.8707941.813541.2116Neighbours21BLASTN+IslandViewer 1421885.gbk