Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009634: Methanococcus vannielii SB chromosome, complete genome

NCBI: NC_009634

Host Lineage: Methanococcus vannielii; Methanococcus; Methanococcaceae; Methanococcales; Euryarchaeota; Archaea

General Information: A methane-producing motile coccus. This type species of Methanococcus was isolated from a San Francisco Bay, USA mud flat. Unlike other members of the genus this species grows only between 20 degrees C - 40 degrees C.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1535557266519111Island text2.1132717.427733.7414Neighbours21BLASTN53555.gbk
229932732940230076Island text1.8622121.325918.8658Neighbours34BLASTN+IslandViewer 299327.gbk
3349204*37255723354Island text1.754814.980525.405Neighbours21BLASTN+349204.gbk
4411599*43682125223Island text1.6355520.411825.634Neighbours21BLASTN+411599.gbk
554799557046822474Island text1.5305817.248327.3785Neighbours21BLASTN+547995.gbk
6714715*73455919845Island text2.0461616.530923.8986Neighbours21BLASTN714715.gbk
7759372*78455425183Island text2.1035718.497132.0953Neighbours21BLASTN+759372.gbk
888720591159924395Island text2.0123524.222229.2875Neighbours21BLASTN887205.gbk
91002295*102622823934Island text2.0413321.440927.8079Neighbours21BLASTN1002295.gbk