Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009633: Alkaliphilus metalliredigens QYMF chromosome, complete genome

NCBI: NC_009633

Host Lineage: Alkaliphilus metalliredigens; Alkaliphilus; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This bacterium is an alkiphilic, moderately halophilic metal-reducing bacterium isolated from borax leachate ponds. It can reduce iron and other metals under alkaline conditions.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
174500*10127626777Island text3.5757427.860848.9363Neighbours21BLASTN74500.gbk
2168266*22378055515Island text3.9084229.26450.2843Neighbours21BLASTN+168266.gbk
328667731322326547Island text1.8353628.930641.9149Neighbours21BLASTN286677.gbk
433770635875121046Island text1.9564328.440845.9929Neighbours21BLASTN+337706.gbk
536532540267337349Island text2.1020728.710345.6866Neighbours21BLASTN+365325.gbk
6587562*60824620685Island text1.5695127.239540.507Neighbours21BLASTN+587562.gbk
771250073209919600Island text1.7925627.279637.7352Neighbours21BLASTN712500.gbk
8760872*77909918228Island text1.7158626.838741.6626Neighbours21BLASTN760872.gbk
994769597159923905Island text1.8734126.065941.3767Neighbours21BLASTN+947695.gbk
101058000108093322934Island text2.0180626.726742.9163Neighbours21BLASTN+1058000.gbk
111595501*162145025950Island text1.9302528.002141.4915Neighbours21+IslandViewer 1595501.gbk
122137999216067022672Island text1.8450925.398243.3244Neighbours21BLASTN+2137999.gbk
132350892*237511224221Island text2.2209932.045142.8573Neighbours21BLASTN+2350892.gbk
142592000*263259940600Island text3.9540231.374653.8098Neighbours33BLASTN+IslandViewer 2592000.gbk
152725128274840123274Island text1.6279927.447130.9782Neighbours21BLASTN+2725128.gbk
163055413*309975944347Island text1.8270624.027241.0281Neighbours21BLASTN+3055413.gbk
173429972*344866918698Island text4.277828.265451.8867Neighbours21BLASTN3429972.gbk
183457185348263825454Island text2.4552623.738444.2441Neighbours21BLASTN3457185.gbk
193522933354215119219Island text1.7805326.024445.7699Neighbours21BLASTN+3522933.gbk
203933941395721123271Island text1.8083226.580737.3188Neighbours21BLASTN+3933941.gbk
214097536*414305745522Island text1.554627.449939.4266Neighbours21BLASTN+IslandViewer 4097536.gbk
224308016*432899020975Island text1.7917726.787541.9722Neighbours21BLASTN+4308016.gbk
234485869*450419418326Island text1.9658726.468338.8842Neighbours21+IslandViewer 4485869.gbk
244563877*460744243566Island text1.8352531.034330.3993Neighbours21BLASTN4563877.gbk
254733678*475790724230Island text2.3339627.626540.7748Neighbours21BLASTN+4733678.gbk