Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009620: Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence

NCBI: NC_009620

Host Lineage: Sinorhizobium medicae; Sinorhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Nitrogen-fixing soil bacterium. This species was isolated from Medicago truncatula, where it forms nitrogen-fixing root nodules. Effective nitrogen fixing, aerobic microsymbiont of a diverse range of annual Medicago (medic) species. Has saprophytic competence and acid tolerance properties. Isolated in 1981 from a nodule recovered from the roots of an annual medic (Medicago murex) growing south of Tempio in Sardinia.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11307932133106923138Island text1.5229519.911224.93Neighbours11BLASTN1307932.gbk
21504933153008725155Island text1.4573120.330719.8502Neighbours11BLASTN+1504933.gbk
31531000155417823179Island text1.5332921.197436.1161Neighbours11BLASTN+1531000.gbk