Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009616: Thermosipho melanesiensis BI429 chromosome, complete genome

NCBI: NC_009616

Host Lineage: Thermosipho melanesiensis; Thermosipho; Thermotogaceae; Thermotogales; Thermotogae; Bacteria

General Information: BI429 (CIP 104789) is the type strain for this species and was isolated from the gills of Bathymodiolus brevior, a deep-sea mussel. The sample was taken from the Lau Basin at the bottom of a black smoker between 1832 and 1887 metres. Thermosipho melanesiensis is a deep-sea thermophilic marine organism closely related to a hot springs isolate, T. africanus.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
199647*12096621320Island text2.2433922.505643.162Neighbours21BLASTN+99647.gbk
2183772*20636322592Island text1.4781322.78742.423Neighbours21BLASTNIslandViewer 183772.gbk
3979861*100760827748Island text3.2149339.44541.0863Neighbours21BLASTN979861.gbk
41433430*145975426325Island text3.692139.506942.9864Neighbours21BLASTN+IslandViewer 1433430.gbk
51604276*162386719592Island text3.5251534.113649.615Neighbours21BLASTN+1604276.gbk