Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009614: Bacteroides vulgatus ATCC 8482 chromosome, complete genome

NCBI: NC_009614

Host Lineage: Bacteroides vulgatus; Bacteroides; Bacteroidaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: Normal gastrointestinal bacterium. This group of microbes constitute the most abundant members of the intestinal microflora of mammals. Typically they are symbionts, but they can become opportunistic pathogens in the peritoneal (intra-abdominal) cavity. Breakdown of complex plant polysaccharides such as cellulose and hemicellulose and host-derived polysaccharides such as mucopolysaccharides is aided by the many enzymes these organisms produce. Bacteroides vulgatus and Bacteroides thetaiotaomicron are the the most common fecal isolates from humans and other animals. Comparison of Bacteroides vulgatus with other Bacteroides species will provide information on their ability to colonize and exploit the intestinal environment.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1296045720027597Island text1.8169234.007753.9883Neighbours34+29604.gbk
2561279*58663625358Island text2.1550935.62347.5667Neighbours34BLASTN561279.gbk
3769851*79276022910Island text1.4602732.842953.6484Neighbours34BLASTN769851.gbk
482124783960618360Island text2.2674434.729753.8027Neighbours34BLASTN821247.gbk
5868452*89050722056Island text1.409632.107244.4268Neighbours34BLASTN868452.gbk
6915605*93876123157Island text1.7633930.757553.8982Neighbours327BLASTN+IslandViewer 915605.gbk
794777597071922945Island text1.697431.196850.6294Neighbours23BLASTN+IslandViewer 947775.gbk
8978506100648027975Island text1.5120532.685336.6021Neighbours34BLASTN+IslandViewer 978506.gbk
91071548*109454022993Island text1.6909639.019934.9799Neighbours34BLASTN+IslandViewer 1071548.gbk
101213500*124884535346Island text2.0394442.134744.7551Neighbours327BLASTN+IslandViewer 1213500.gbk
111263372129215528784Island text1.3808732.39343.5437Neighbours327BLASTN+IslandViewer 1263372.gbk
121328050*135025022201Island text2.0901243.53241.3128Neighbours34BLASTN1328050.gbk
131461628148320721580Island text1.7624941.597529.2949Neighbours34BLASTN+1461628.gbk
141999130202649027361Island text1.6268137.27545.9717Neighbours34BLASTN+IslandViewer 1999130.gbk
152034265206055626292Island text1.6329631.265850.2467Neighbours327BLASTN+IslandViewer 2034265.gbk
162431005245693225928Island text2.0345741.677840.8099Neighbours34BLASTN+2431005.gbk
172723262275938436123Island text1.5046831.961339.0242Neighbours327BLASTN+IslandViewer 2723262.gbk
182783698280921925522Island text1.8925835.787353.0526Neighbours327BLASTN2783698.gbk
193081190310519724008Island text2.1903533.321449.9533Neighbours34BLASTN3081190.gbk
203385187341187526689Island text1.8375932.294747.9562Neighbours34BLASTN+IslandViewer 3385187.gbk
213476000*349639520396Island text2.3462433.991355.6066Neighbours34BLASTN3476000.gbk
223714770373422619457Island text1.7298333.434547.7918Neighbours34BLASTN+3714770.gbk
233748950*377594126992Island text1.5435634.540142.4685Neighbours34BLASTNIslandViewer 3748950.gbk
244201098423483733740Island text2.016136.360452.8851Neighbours312BLASTN+IslandViewer 4201098.gbk
254528418454909920682Island text1.6557932.837850.9883Neighbours21BLASTN+IslandViewer 4528418.gbk
264565620458915523536Island text1.5263434.262544.6715Neighbours23+IslandViewer 4565620.gbk
274802000482571423715Island text1.5423534.353741.3266Neighbours327BLASTN+IslandViewer 4802000.gbk
284844000*486687722878Island text1.8088636.191740.4247Neighbours34BLASTN+4844000.gbk
294918877494965730781Island text1.6753338.247743.7029Neighbours327BLASTN+IslandViewer 4918877.gbk