Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009613: Flavobacterium psychrophilum JIP02/86, complete genome

NCBI: NC_009613

Host Lineage: Flavobacterium psychrophilum; Flavobacterium; Flavobacteriaceae; Flavobacteriales; Bacteroidetes; Bacteria

General Information: Flavobacterium psychrophilum JIP02/86 (ATCC 49511) is a virulent strain. Flavobacterium psychrophilum cause cold water disease in salmon and trout. This bacterium causes septicemia in young fish (rainbow trout fry syndrome) and extensive lesions in adult fish. There is a high rate of mortality associated with these diseases with considerable economic impact for the aquaculture industry.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1150004011025111Island text1.6507921.456436.1468NeighboursBLASTN15000.gbk
214827317291624644Island text1.675118.687330.9493NeighboursBLASTN148273.gbk
332993835397824041Island text1.5717617.45837.0203NeighboursBLASTN329938.gbk
437711239671719606Island text1.500424.902731.9893NeighboursBLASTN377112.gbk
5781180*80127720098Island text1.6779217.642333.8744NeighboursBLASTN+781180.gbk
691200093521323214Island text1.6111518.020432.5131Neighbours21912000.gbk
71337536138159944064Island text1.5689121.144729.3609Neighbours21BLASTN1337536.gbk
81505548*152570320156Island text1.5727517.120623.6996Neighbours21BLASTN1505548.gbk
91825449*184591120463Island text1.676417.183432.6471Neighbours21BLASTN1825449.gbk
102307698*233034022643Island text1.5432119.13332.3426Neighbours21BLASTN2307698.gbk
112353185237911225928Island text3.2255420.444740.0564Neighbours21BLASTN+2353185.gbk
122697913*271724019328Island text1.5619419.59232.7385NeighboursBLASTN2697913.gbk