Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009524: Psychrobacter sp. PRwf-1 chromosome, complete genome

NCBI: NC_009524

Host Lineage: Psychrobacter; Psychrobacter; Moraxellaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This organism grows slower than Psychrobacter arcticus 273-4 at 4 degrees C, but is capable of growth at 37 degrees C, while strain 273-4 is not. Psychrobacter is a member of the gamma Proteobacteria family. This genus is commonly isolated from cold environments, including soil, sea-ice, and the skin and gills of fish. It has also been associated with food spoilage and is often resistant to irradiation used for food preservation. Psychrobacters have also been identified from a variety of human sources. The strain Psychrobacter sp. PRwf-1 was isolated from the skin and gills of Lutjanus vivanus caught off the coast of LoĆ­za in northeastern Puerto Rico.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
126358728297419388Island text1.9261426.839121.245Neighbours21BLASTN+IslandViewer 263587.gbk
286150088534423845Island text1.5721331.383846.6927Neighbours21BLASTN+IslandViewer 861500.gbk
31369395139151622122Island text1.8403929.316128.631BLASTN+IslandViewer 1369395.gbk
41488714151015321440Island text1.5567227.810927.5846Neighbours21BLASTN+IslandViewer 1488714.gbk
51627414165005322640Island text2.561227.681216.0708Neighbours21BLASTN+IslandViewer 1627414.gbk
61796000*181488218883Island text1.8850528.692219.5669BLASTN+IslandViewer 1796000.gbk