Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009523: Roseiflexus sp. RS-1 chromosome, complete genome

NCBI: NC_009523

Host Lineage: Roseiflexus; Roseiflexus; Chloroflexaceae; Chloroflexales; Chloroflexi; Bacteria

General Information: Roseiflexus sp. RS-1 was isolated from a hot spring microbial mat from Octopus Spring in Yellowstone National Park, USA at 60 degrees C. Anoxygenic photosynthesis, Carbon fixation, Nitrogen fixation.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
134134736595024604Island text1.3813228.745128.6576Neighbours11BLASTN341347.gbk
2379705*40467524971Island text1.648432.363920.0119Neighbours11BLASTNIslandViewer 379705.gbk
358536761116825802Island text2.0159829.08644.0853Neighbours55BLASTN585367.gbk
490777593108623312Island text1.501733.76736.5696Neighbours11BLASTN+IslandViewer 907775.gbk
51025556105212726572Island text1.9959338.945224.5201Neighbours11BLASTN+IslandViewer 1025556.gbk
61101214112493223719Island text1.5793333.128618.9548Neighbours11BLASTNIslandViewer 1101214.gbk
71365717*138834622630Island text1.5103726.611149.7746Neighbours551365717.gbk
81746725176737920655Island text1.5588534.785427.3876Neighbours11BLASTNIslandViewer 1746725.gbk
92769154*279330424151Island text1.6621229.34830.5518Neighbours55BLASTN2769154.gbk
104222696426553142836Island text1.4290838.12230.8676IslandViewer 4222696.gbk
114585065461194726883Island text2.6208241.172532.938Neighbours11BLASTNIslandViewer 4585065.gbk
125104413513693232520Island text3.1102634.962444.8423BLASTN+IslandViewer 5104413.gbk
135298488*532136422877Island text1.8451525.261439.8079Neighbours555298488.gbk
145438000546285624857Island text1.9967633.058537.2623Neighbours11BLASTN5438000.gbk
155475812549831222501Island text1.6055233.76726.8912Neighbours11BLASTN+5475812.gbk
165522447554759925153Island text2.2976232.45840.7547Neighbours14BLASTNIslandViewer 5522447.gbk