Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009511: Sphingomonas wittichii RW1 chromosome, complete genome

NCBI: NC_009511

Host Lineage: Sphingomonas wittichii; Sphingomonas; Sphingomonadaceae; Sphingomonadales; Proteobacteria; Bacteria

General Information: Sphingomonas wittichii was isolated from water from the Elbe River in Germany. This organism is able to grow using dibenzo-p-dioxin or dibenzofuran as a sole carbon source. These compounds are widespread environmental contaminants formed as by-products in the manufacture of pesticides and paper, and during the incineration of industrial waste. The enzymes involved in degradation of these substrates is contained, in part, on plasmids in Sphingomonas wittichii.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1187508*20666819161Island text1.5064517.673917.9681Neighbours11BLASTN187508.gbk
21746631176742520795Island text1.5824416.093117.563Neighbours11BLASTN+1746631.gbk
31781914180504423131Island text1.5423821.235517.6835Neighbours11BLASTNIslandViewer 1781914.gbk
42726296*274609919804Island text1.6389922.130420.3289Neighbours11BLASTN+IslandViewer 2726296.gbk
52921448*294816026713Island text2.7182723.897925.9864Neighbours11BLASTN+IslandViewer 2921448.gbk
64582188460559923412Island text2.7041726.549637.6938Neighbours11BLASTN+4582188.gbk
74882047491378731741Island text2.7127424.587417.9397Neighbours11BLASTN+IslandViewer 4882047.gbk
85362705*538749924795Island text1.6886218.478115.3202Neighbours11BLASTNIslandViewer 5362705.gbk