Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009486: Thermotoga petrophila RKU-1 chromosome, complete genome

NCBI: NC_009486

Host Lineage: Thermotoga petrophila; Thermotoga; Thermotogaceae; Thermotogales; Thermotogae; Bacteria

General Information: Thermotoga petrophila strain RKU-1 is an anaerobic thermophile, isolated from the production waters of the Kubiki oil reservoir in Niigata, Japan. This organism, a member of the Thermotogales, has the characteristic morphology of one or more cells contained in a sheath-like envelope which extends beyond the cell wall. Preliminary sequencing of Thermotogales genomes has identified extensive horizontal gene transfer between these organisms and the Archaea.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1155651*17973324083Island text1.6383123.081831.3376Neighbours317BLASTN+155651.gbk
234666536825621592Island text1.483826.106540.3216Neighbours317BLASTN+346665.gbk
31103915112849324579Island text2.1022636.407534.2029Neighbours317BLASTNIslandViewer 1103915.gbk
41293510*132459931090Island text1.4485826.665923.2123Neighbours317BLASTN1293510.gbk
51403175*142170818534Island text2.0030227.293748.1714Neighbours317BLASTN1403175.gbk
61737703179309955397Island text1.4502823.662543.7081Neighbours317BLASTN+IslandViewer 1737703.gbk