Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009485: Bradyrhizobium sp. BTAi1 chromosome, complete genome

NCBI: NC_009485

Host Lineage: Bradyrhizobium; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This organism is a photosynthetic rhizobium that is also capable of nitrogen-fixation, the first such example of such an organism. It can form nodules on the legume Aeschynomene indica and was isolated from this plant at the Boyce Thompson Institute for Plant Research in Ithaca, NY. It can form stem and root nodules. The photosynthetic reaction centers are similar to those found in purple photosynthetic bacteria and this microbe aids the plant in carbon metabolism and nitrogen metabolism.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1584707*61257727871Island text1.7631721.64320.0002Neighbours11BLASTN+IslandViewer 584707.gbk
21222697124331420618Island text1.8149828.088518.8533Neighbours11BLASTN1222697.gbk
31487485151467327189Island text2.1989924.652324.3467Neighbours11BLASTN+IslandViewer 1487485.gbk
41604942165100746066Island text1.4842221.121124.5401Neighbours11BLASTN+IslandViewer 1604942.gbk
51648896166956820673Island text1.6165422.76716.8704Neighbours11BLASTN+IslandViewer 1648896.gbk
61946000*196826922270Island text1.512219.850421.0013Neighbours11BLASTN+1946000.gbk
73461051348193220882Island text1.3996321.005631.2766Neighbours11BLASTN+3461051.gbk
83579323360336924047Island text2.3498822.273228.3171Neighbours11BLASTN+IslandViewer 3579323.gbk
95171658*521528943632Island text1.661423.32319.6817Neighbours11BLASTN+IslandViewer 5171658.gbk
107021228*704909927872Island text1.4888219.248524.2965Neighbours11BLASTN+IslandViewer 7021228.gbk
117626677765287926203Island text1.5201921.563628.8598Neighbours11BLASTN+IslandViewer 7626677.gbk
127827782785096423183Island text1.7939824.40120.1216Neighbours11BLASTN+7827782.gbk
138138314*818467746364Island text1.7243325.858119.414Neighbours11BLASTN+IslandViewer 8138314.gbk
148187321821301125691Island text1.4119219.181721.9942Neighbours11BLASTN+IslandViewer 8187321.gbk