Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009483: Geobacter uraniireducens Rf4 chromosome, complete genome

NCBI: NC_009483

Host Lineage: Geobacter uraniireducens; Geobacter; Geobacteraceae; Desulfuromonadales; Proteobacteria; Bacteria

General Information: Geobacter uraniireducens was isolated from an in situ uranium bioremediation study site in Rifle, Colorado, USA. Iron- and uranium-reducing bacterium. Gram-negative bacteria.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1665028538418883Island text1.7305735.925330.7528Neighbours33BLASTN+66502.gbk
273901076213723128Island text1.5222736.806935.1139Neighbours33BLASTN739010.gbk
393600095829622297Island text1.7614540.649333.1465Neighbours33BLASTN+936000.gbk
41116385*113686720483Island text1.6719537.493927.4394Neighbours315BLASTN1116385.gbk
51253077*128049027414Island text1.4765138.223538.2081BLASTN1253077.gbk
61448552147275624205Island text2.0153935.402555.6432Neighbours310BLASTN+IslandViewer 1448552.gbk
71551040156967818639Island text1.6013436.466435.4339Neighbours33BLASTN1551040.gbk
81636189*165657720389Island text1.5507939.524633.7678Neighbours31BLASTN1636189.gbk
91779601180491625316Island text1.7803136.532124.5721Neighbours33BLASTN+1779601.gbk
101936486197577939294Island text1.8856138.964121.3905Neighbours319BLASTN+1936486.gbk
112086021211859932579Island text4.5016853.198125.1946Neighbours31BLASTN2086021.gbk
122136424215660520182Island text1.9033942.575525.5681Neighbours23BLASTN+2136424.gbk
132201986*224909947114Island text1.7940335.177538.6344Neighbours23BLASTN2201986.gbk
142401209*242853427326Island text2.2883743.240230.0865Neighbours23BLASTN+2401209.gbk
152489000*253317244173Island text2.1868441.156425.7888Neighbours23BLASTN+2489000.gbk
162640403*273837897976Island text2.0538640.623526.7001Neighbours23BLASTN+2640403.gbk
172854500287964325144Island text1.714937.427827.4965Neighbours23BLASTN2854500.gbk
182993818302084927032Island text1.8885441.00829.1692Neighbours315BLASTN2993818.gbk
193024115*305675532641Island text2.2338746.435831.3322Neighbours315BLASTN+3024115.gbk
203173464319609922636Island text1.4749736.241531.6969Neighbours33BLASTN3173464.gbk
213331500335661025111Island text1.5675737.852627.6099Neighbours33BLASTN+3331500.gbk
223480740351622535486Island text2.3079944.622123.55533480740.gbk
233544333357000425672Island text3.2793448.752645.8858Neighbours23BLASTN3544333.gbk
243608000364042832429Island text2.3831644.941631.6726Neighbours315BLASTN+3608000.gbk
253644677367928034604Island text2.2481541.571837.3218Neighbours315BLASTN+3644677.gbk
263727490*376145233963Island text1.8682737.217329.6382Neighbours23BLASTN+IslandViewer 3727490.gbk
274015777404009924323Island text2.1279542.885433.2761BLASTN+4015777.gbk
284434375*447518540811Island text1.4857937.943833.5912Neighbours312BLASTN+IslandViewer 4434375.gbk
294885914*491365627743Island text3.1501648.80232.6216Neighbours33BLASTN+4885914.gbk
305113729*513999926271Island text1.7326938.242429.1875Neighbours23BLASTN5113729.gbk