Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009481: Synechococcus sp. WH 7803 chromosome, complete genome

NCBI: NC_009481

Host Lineage: Synechococcus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: Marine Synechococcus and Prochlorococcus are the most abundant photosynthetic organisms on earth and between them account for about half of the world's photosynthesis. WH7803 was isolated from the Sargasso Sea, in mesotrophic water (rich in nutrient salts) and is the best physiologically characterized marine Synechococcus strain.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18276711705334287Island text3.9264550.97830.0096Neighbours53BLASTNIslandViewer 82767.gbk
267647869707720600Island text2.748340.421538.4915Neighbours11BLASTN+676478.gbk
3764382*78231617935Island text1.9351528.133149.8599Neighbours11BLASTN+IslandViewer 764382.gbk
482297584273119757Island text2.1719231.687755.8046Neighbours11BLASTN822975.gbk
584550087311327614Island text1.4841729.292327.3115Neighbours11BLASTNIslandViewer 845500.gbk
687392189968425764Island text2.4803942.659624.8998Neighbours11BLASTN+873921.gbk
71109324*114386434541Island text1.5846527.334628.8403Neighbours11BLASTN+IslandViewer 1109324.gbk
81190301*121971529415Island text2.8258548.1924.9046Neighbours11BLASTN+IslandViewer 1190301.gbk
91365000*138968324684Island text2.4259939.378126.1746Neighbours11BLASTNIslandViewer 1365000.gbk
101523764*154614722384Island text2.1528132.932233.8566Neighbours11BLASTN+1523764.gbk
111638394166301524622Island text1.5690628.100735.3088Neighbours11BLASTN+IslandViewer 1638394.gbk
121927995195413626142Island text1.985835.422141.7956Neighbours11BLASTNIslandViewer 1927995.gbk
132081500210860227103Island text2.5991542.486419.9326Neighbours11BLASTN+IslandViewer 2081500.gbk
142204629*223378829160Island text2.4266433.727742.5082Neighbours11BLASTNIslandViewer 2204629.gbk