Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009480: Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete

NCBI: NC_009480

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Phytopathogen that causes bacterial wilt and canker of tomato (Lycopersicon esculentum). This is considered to be the most important bacterial disease of tomato causing substantial economic losses worldwide. Bacteria enter the plant by wounds on root or stem and then find their way into the xylem allowing a massive systemic colonization. The first stage of the disease is characterized by unilateral wilting of leaves. Wilting then spreads to all leaves, canker lesions develop on the stem and the plant dies. If infection occurs at a late stage of plant development, plants can survive and yield fruit that may have spots, so called bird's eyes. Often the seeds will be infected and this has been the major source for outbreaks of Clavibacter michiganensis subsp. michiganensis infections in agriculture. Members of the Clavibacter genus are known to produce antimicrobial compounds.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1314127854247131Island text2.9230815.053410.606Neighbours11BLASTN+IslandViewer 31412.gbk
29964013380134162Island text5.9925618.024513.7905Neighbours11BLASTN+IslandViewer 99640.gbk
3703102*72717524074Island text3.4610719.970623.8397Neighbours11BLASTN+IslandViewer 703102.gbk
4739395*76050021106Island text2.0579814.351718.6645Neighbours11BLASTNIslandViewer 739395.gbk
51261961*128733125371Island text1.8972215.17714.5169Neighbours11BLASTNIslandViewer 1261961.gbk
62580429261873938311Island text4.6158826.563925.0571Neighbours11BLASTN+IslandViewer 2580429.gbk
72932108*295389521788Island text1.5376518.966634.1371Neighbours11BLASTN+2932108.gbk