Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009468: Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence

NCBI: NC_009468

Host Lineage: Acidiphilium cryptum; Acidiphilium; Acetobacteraceae; Rhodospirillales; Proteobacteria; Bacteria

General Information: Acidiphilium cryptum strain JF-5 was isolated under iron-reducing conditions from coal mine lake sediment and is able to grow by coupling the reduction of iron to the oxidation of glucose. Iron-reducing acidophile. Acidiphilium cryptum was first isolated from a supposedly pure culture of Thiobacillus ferrooxidans. This organism, a heterotrophic acidophile, has been isolated from acid mine drainage, hydrothermal vent water, and other acidic mineral environments.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1381126312825017Island text1.3473329.778727.817Neighbours11BLASTN+38112.gbk