Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009467: Acidiphilium cryptum JF-5 plasmid pACRY01, complete sequence

NCBI: NC_009467

Host Lineage: Acidiphilium cryptum; Acidiphilium; Acetobacteraceae; Rhodospirillales; Proteobacteria; Bacteria

General Information: Acidiphilium cryptum strain JF-5 was isolated under iron-reducing conditions from coal mine lake sediment and is able to grow by coupling the reduction of iron to the oxidation of glucose. Iron-reducing acidophile. Acidiphilium cryptum was first isolated from a supposedly pure culture of Thiobacillus ferrooxidans. This organism, a heterotrophic acidophile, has been isolated from acid mine drainage, hydrothermal vent water, and other acidic mineral environments.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111781214414126330Island text1.3744523.048432.2451Neighbours11BLASTN+117812.gbk