Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009465: Candidatus Vesicomyosocius okutanii HA, complete genome

NCBI: NC_009465

Host Lineage: Calyptogena okutanii thioautotrophic gill symbiont; sulfur-oxidizing symbionts; ; sulfur-oxidizing symbionts; Proteobacteria; Bacteria

General Information: This strain was collected off Hatsushima island in Sagami Bay, Japan. Calyptogena okutanii (deep-sea clam) thioautotrophic gill symbiont. The bivalve marine species Calyptogena okutanii depends on sulfur-oxidizing symbiotic bacteria housed in its gill tissues for its sole nutritional support. The symbiont is transmitted vertically between generations via the clam's eggs. This anaerobic symbiosis oxidizes hydrogen sulfide as an energy source and fixes carbon dioxide into organic compounds.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
129735*8609956365Island text1.7709716.696330.1035Neighbours21BLASTN29735.gbk
290000*13018540186Island text1.8434715.496728.7361Neighbours21BLASTN90000.gbk
3171000*19666925670Island text1.7579219.421835.8482Neighbours21BLASTN171000.gbk
422456424709922536Island text1.7451917.39932.6844Neighbours21BLASTN+224564.gbk
5766893*80098034088Island text1.6777318.335233.2905Neighbours21BLASTN766893.gbk
6813816*84287229057Island text1.7772417.612831.2079Neighbours21BLASTN813816.gbk
7938378*97956141184Island text2.5542416.800629.3675Neighbours21BLASTN+938378.gbk