Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009464: Uncultured methanogenic archaeon RC-I, complete genome

NCBI: NC_009464

Host Lineage: Methanocella arvoryzae; Methanocella; Methanocellaceae; Methanocellales; Euryarchaeota; Archaea

General Information: This organism is a key methane producer in the rhizome of rice. A large portion of the methane that is emitted in rice fields is produced by methanogenic archaea. Rice Cluster I (RC-I) methanogens in the rice rhizosphere play a key role in this methane production.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1180335*20674226408Island text1.6338237.56347.3061BLASTN+180335.gbk
2225400*25009624697Island text2.0372234.563549.9574Neighbours352BLASTN+IslandViewer 225400.gbk
325155027052818979Island text1.778635.621436.7645Neighbours352BLASTN251550.gbk
4300422*32531824897Island text1.9335338.717633.9872Neighbours347BLASTN+300422.gbk
537937740809928723Island text4.8138153.809524.2165Neighbours347BLASTN+IslandViewer 379377.gbk
6650997*69023339237Island text4.2040449.828623.7963Neighbours347BLASTN+IslandViewer 650997.gbk
793164796146329817Island text4.2322849.641630.4048Neighbours347BLASTN+IslandViewer 931647.gbk
81397739141962721889Island text1.7054737.205745.4075Neighbours352BLASTN+IslandViewer 1397739.gbk
91479174151848939316Island text5.2385254.461725.3577Neighbours347BLASTN+IslandViewer 1479174.gbk
101531847155207520229Island text2.1746738.685630.0707Neighbours352BLASTN+1531847.gbk
111804791182644521655Island text2.4853840.883739.3281Neighbours352BLASTN+1804791.gbk
122015035203813923105Island text2.2121838.754334.265BLASTN+IslandViewer 2015035.gbk
132288500230950821009Island text1.5627837.551729.0596Neighbours352BLASTN2288500.gbk
142372607*239884626240Island text2.8904844.979227.3579Neighbours352BLASTN+IslandViewer 2372607.gbk
152523092255904635955Island text3.7813551.860229.478Neighbours347BLASTN+IslandViewer 2523092.gbk
162687445272578838344Island text5.2793755.460226.0385Neighbours347BLASTN+IslandViewer 2687445.gbk
172881771*290053218762Island text1.7050435.429844.3416Neighbours347BLASTN2881771.gbk
183058665308507026406Island text2.8275343.503227.8665Neighbours352BLASTN+3058665.gbk
193135468315865723190Island text1.8074336.219335.9118Neighbours347BLASTN+IslandViewer 3135468.gbk