Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009454: Pelotomaculum thermopropionicum SI, complete genome

NCBI: NC_009454

Host Lineage: Pelotomaculum thermopropionicum; Pelotomaculum; Peptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This type strain was isolated from granular sludge from a thermophilic upflow anaerobic sludge blanket (UASB) reactor. It was isolated both in pure culture and in co-culture with methanogens. In syntrophic association with hydrogenotrophic methanogens, this species can utilize propionate, ethanol, lactate, ethylene glycol, 1-butanol, 1-propanol, 1-pentanol and 1,3-propanediol. This is the first mesophilic, syntropic propionate-oxidizing species known which is not a member of the delta-proteobacteria.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113646816064824181Island text1.8143332.734336.942Neighbours22BLASTN+136468.gbk
2259022*28379324772Island text1.8109931.795850.2368Neighbours316BLASTN259022.gbk
3316000*33359917600Island text1.5419929.839542.6788Neighbours357BLASTN316000.gbk
435804439057032527Island text3.257539.297919.0936Neighbours22BLASTNIslandViewer 358044.gbk
548995451152821575Island text1.7372933.211240.1128Neighbours316BLASTNIslandViewer 489954.gbk
6713892*73833324442Island text1.8254532.207323.2647Neighbours316BLASTN+IslandViewer 713892.gbk
71042592*106403821447Island text1.8904831.321251.4324Neighbours316BLASTN1042592.gbk
81246393*126862722235Island text2.045832.102827.3596Neighbours22BLASTN1246393.gbk
91389974140884318870Island text1.4864730.319825.405Neighbours22BLASTN+1389974.gbk
101462930*148290119972Island text1.5896830.376539.8252Neighbours22BLASTN1462930.gbk
111577319*165681079492Island text2.7248536.058420.4052Neighbours21BLASTN+IslandViewer 1577319.gbk
122201987222457922593Island text2.048733.075731.9477Neighbours316BLASTN+IslandViewer 2201987.gbk
132292716231386521150Island text1.9595231.691236.9117BLASTN+IslandViewer 2292716.gbk
142502724253147128748Island text2.9365237.855634.4797Neighbours21BLASTNIslandViewer 2502724.gbk
152663539*269835134813Island text3.1919339.990729.8006Neighbours22BLASTN+IslandViewer 2663539.gbk
162801808282091519108Island text1.6069630.994622.1627Neighbours316BLASTN+IslandViewer 2801808.gbk