Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009446: Dichelobacter nodosus VCS1703A, complete genome

NCBI: NC_009446

Host Lineage: Dichelobacter nodosus; Dichelobacter; Cardiobacteriaceae; Cardiobacteriales; Proteobacteria; Bacteria

General Information: Causative agent of ovine footrot which results in lameness and the loss of commerically important animals. The disease is caused by a mixed microbial infection of Fusobacterium necrophorum, which causes skin lesions, and Dichelobacter nodosus, which can then invade and gain access to the deeper tissue. Once aerotolerant Dichelobacter nodosus infects, which it does through the production of a number of fimbrial adhesins, it secretes both extracellular proteases and toxins which result in damage to the soft tissue underneath the horn of the hoof.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
117495122026945319Island text2.5015247.612828.7046Neighbours11BLASTN+IslandViewer 174951.gbk
235104237422723186Island text1.4214328.872837.9096Neighbours35BLASTN+351042.gbk
3473960*49851424555Island text2.0476229.008112.7659Neighbours41BLASTN+473960.gbk