Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009443: Streptococcus suis 98HAH33, complete genome

NCBI: NC_009443

Host Lineage: Streptococcus suis; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Isolated from a human in Haian County, Jiangsu Province, China, 1998. Causative agent of meningitis, endocarditis, septicemia and arthritis in swine. Streptococci are Gram-positive, nonmotile, nonsporeforming, catalase-negative cocci that occur in pairs or chains. Members of this genus vary widely in pathogenic potential. Most streptococci are facultative anaerobes, and some are obligate anaerobes. Serologic grouping is based on antigenic differences in cell wall carbohydrates, in cell wall pili-associated protein, and in the polysaccharide capsule in group B streptococci. Streptococcus suis is a pathogen of pigs and is responsible for a variety of diseases including meningitis, arthritis and pneumonia. Occasionally this organism can infect humans causing septicemia, meningitis and endocarditis.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1293495220922861Island text2.6105932.023751.0903Neighbours16BLASTN+IslandViewer 29349.gbk
214250016188819389Island text1.591129.168341.5995Neighbours16BLASTN+142500.gbk
327724629700619761Island text2.5522834.524753.2143Neighbours16BLASTN+277246.gbk
41445936*147043724502Island text1.5871426.699943.8832Neighbours21BLASTN+IslandViewer 1445936.gbk
51860390*188405923670Island text1.5395629.413921.6028Neighbours16BLASTN+1860390.gbk
61996812*202182725016Island text2.4265932.160447.8118Neighbours21BLASTNIslandViewer 1996812.gbk