Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009442: Streptococcus suis 05ZYH33 chromosome, complete genome

NCBI: NC_009442

Host Lineage: Streptococcus suis; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Isolated from a human in Ziyang County, China, 2005. Causative agent of meningitis, endocarditis, septicemia and arthritis in swine. Streptococci are Gram-positive, nonmotile, nonsporeforming, catalase-negative cocci that occur in pairs or chains. Members of this genus vary widely in pathogenic potential. Most streptococci are facultative anaerobes, and some are obligate anaerobes. Serologic grouping is based on antigenic differences in cell wall carbohydrates, in cell wall pili-associated protein, and in the polysaccharide capsule in group B streptococci. Streptococcus suis is a pathogen of pigs and is responsible for a variety of diseases including meningitis, arthritis and pneumonia. Occasionally this organism can infect humans causing septicemia, meningitis and endocarditis.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
114250016198619487Island text1.9427528.869742.5222Neighbours16BLASTN+142500.gbk
227739229569418303Island text2.3844133.473450.6814Neighbours16BLASTN+277392.gbk
3867625*89009922475Island text1.5548226.214443.3691Neighbours21BLASTN+IslandViewer 867625.gbk
490850793300824502Island text1.5132329.997624.5158Neighbours21BLASTN+IslandViewer 908507.gbk
51158268*118301424747Island text2.0860229.369944.6156Neighbours21BLASTN+1158268.gbk
61216355123736921015Island text2.4438231.699947.288Neighbours21BLASTN+IslandViewer 1216355.gbk
71446508*147101524508Island text3.0172124.662621.5495Neighbours21BLASTN+IslandViewer 1446508.gbk
81865244*188468619443Island text3.1655624.811515.2089Neighbours16BLASTN+1865244.gbk