Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009441: Flavobacterium johnsoniae UW101 chromosome, complete genome

NCBI: NC_009441

Host Lineage: Flavobacterium johnsoniae; Flavobacterium; Flavobacteriaceae; Flavobacteriales; Bacteroidetes; Bacteria

General Information: Flavobacterium johnsoniae ATCC 17061 was isolated from soil in England. Common soil and freshwater bacterium that is motile by gliding. Flavobacterium johnsoniae, formerly Cytophaga johnsonae, is common in soil and freshwater. This organism belongs to a large group of related environmental microorganisms that are characterized by the ability to utilize a wide variety of naturally occurring complex compounds, such as chitin, cellulose, and lignin.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1395427*41687421448Island text2.3498725.222741.0434Neighbours21BLASTN395427.gbk
23155500317457419075Island text1.6304321.501931.7439Neighbours21IslandViewer 3155500.gbk
33174588319860224015Island text2.0795325.995740.0292Neighbours21BLASTN+IslandViewer 3174588.gbk
43522519*354859926081Island text2.6531925.090239.3753Neighbours23BLASTN+IslandViewer 3522519.gbk
53562125359247430350Island text1.9029824.630535.8699Neighbours21BLASTN+IslandViewer 3562125.gbk
63597020365035453335Island text1.5447427.143124.4Neighbours23BLASTN+IslandViewer 3597020.gbk
74218434424677228339Island text1.623620.745725.9715Neighbours21BLASTN+4218434.gbk
84328035*435073022696Island text2.622427.241941.37Neighbours21+IslandViewer 4328035.gbk
94357593438019522603Island text2.0113430.244535.9117Neighbours21+IslandViewer 4357593.gbk
104384500440759923100Island text2.1086134.217524.1212Neighbours21+IslandViewer 4384500.gbk
114449500*447319423695Island text2.0414433.609622.7568Neighbours23BLASTN+IslandViewer 4449500.gbk
125248791526893720147Island text1.4966725.553330.2107Neighbours21BLASTN+IslandViewer 5248791.gbk