Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009440: Metallosphaera sedula DSM 5348 chromosome, complete genome

NCBI: NC_009440

Host Lineage: Metallosphaera sedula; Metallosphaera; Sulfolobaceae; Sulfolobales; Crenarchaeota; Archaea

General Information: Acid-loving thermophile which can oxidize coal and pyrite. Metallosphaera sedula was isolated from a thermal pond in the Pisciarelli Solfatara in Italy. This organism is able to leach metals from sulfidic ores making it a potential bioleaching agent. The rate of oxidation of iron pyrite for this organism is increased under conditions of thermal and chemical stress.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
121947*4433322387Island text1.8557228.535446.2663Neighbours21BLASTN21947.gbk
279263*12298143719Island text2.2657229.471932.7805Neighbours21BLASTN+79263.gbk
321754724033022784Island text1.4846129.395732.3852BLASTN+217547.gbk
41045882107042324542Island text1.4945731.502929.833BLASTN1045882.gbk
51568500*158713918640Island text1.5400333.864347.253Neighbours36BLASTN1568500.gbk
61810301183259922299Island text1.5055732.360344.8112BLASTN1810301.gbk
71857589*188104723459Island text1.7131432.025229.5083BLASTN+1857589.gbk
81908864*193023921376Island text1.3974329.079547.9839BLASTN1908864.gbk
92093500*211191018411Island text1.5800133.360535.6368Neighbours21BLASTN+IslandViewer 2093500.gbk
102151638*217676025123Island text1.5180828.878919.2593Neighbours21BLASTN2151638.gbk