Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009437: Caldicellulosiruptor saccharolyticus DSM 8903, complete genome

NCBI: NC_009437

Host Lineage: Caldicellulosiruptor saccharolyticus; Caldicellulosiruptor; Thermoanaerobacterales Family III; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Caldicellulosiruptor saccharolyticus is a cellulolytic thermphile. This organism produces thermostable cellulases, which are of use in paper manufacturing. Caldicellulosiruptor saccharolyticus DSM 8903 was isolated from a hot spring in New Zealand.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116617918631320135Island text1.8439917.852236.996Neighbours21BLASTN+IslandViewer 166179.gbk
2283382*30213118750Island text2.2460120.837444.908Neighbours21BLASTN+IslandViewer 283382.gbk
3475817*49786122045Island text3.498432.196652.7062Neighbours21BLASTN+475817.gbk
453879255800919218Island text1.8852919.800329.4798Neighbours21BLASTN+538792.gbk
568521470562520412Island text1.622121.291343.0214Neighbours21BLASTN685214.gbk
61189432122380334372Island text1.7188826.161147.6215Neighbours21BLASTNIslandViewer 1189432.gbk
71481064*150445323390Island text1.5615917.828938.4882Neighbours21BLASTN1481064.gbk
81556934*158045323520Island text1.6052718.734830.6797Neighbours21BLASTN1556934.gbk
92367842*241150043659Island text3.4538930.362144.8747Neighbours21BLASTN+2367842.gbk
102579161262292443764Island text1.7492518.952131.8168Neighbours21BLASTN+2579161.gbk
112778061280974231682Island text2.0331219.499231.6679Neighbours21BLASTN+IslandViewer 2778061.gbk
122815500*283415118652Island text1.9106521.162136.0742Neighbours21BLASTN+IslandViewer 2815500.gbk
132889466291258123116Island text2.1875418.51933.2135Neighbours21BLASTN+2889466.gbk