Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009436: Enterobacter sp. 638, complete genome

NCBI: NC_009436

Host Lineage: Enterobacter; Enterobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Enterobacter sp. 638 provides information on the host/endophyte relationship between plants and bacteria. Enterobacter sp. 638 is an endophytic plant growth promoting gamma-proteobacterium that was isolated from the stem of poplar (Populus trichocarpaxdeltoides cv. H11-11), a potentially important biofuel feed stock plant.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1203365*22209918735Island text1.4988632.022131.8675Neighbours51BLASTN+203365.gbk
2522649*54989827250Island text2.3097639.32922.7273Neighbours41BLASTN+IslandViewer 522649.gbk
31141376118544644071Island text1.600838.652154.1083Neighbours41BLASTN+IslandViewer 1141376.gbk
41466580149113624557Island text1.5389832.550227.8216Neighbours41BLASTN+IslandViewer 1466580.gbk
51648159166832520167Island text2.0546732.943229.2834Neighbours41BLASTNIslandViewer 1648159.gbk
61679265169735818094Island text1.5882231.263720.3831Neighbours41BLASTN+IslandViewer 1679265.gbk
72056000207833922340Island text1.5326432.277520.8003Neighbours41BLASTN+IslandViewer 2056000.gbk
82395913241965623744Island text1.8123134.375623.1575Neighbours41BLASTN+IslandViewer 2395913.gbk
92685910*270592620017Island text2.0987634.449324.0535Neighbours41BLASTN+2685910.gbk
102776410*282425847849Island text1.6278730.662724.2325Neighbours41BLASTN+IslandViewer 2776410.gbk
112836847286672729881Island text2.0151835.913121.1064Neighbours41BLASTNIslandViewer 2836847.gbk
123117661316011542455Island text3.6340942.429227.7125Neighbours41BLASTN+3117661.gbk
133367194*339084323650Island text4.2091449.047318.7491Neighbours51BLASTN+IslandViewer 3367194.gbk
143807420382718519766Island text1.369932.648347.4053Neighbours51BLASTN+IslandViewer 3807420.gbk