Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009428: Rhodobacter sphaeroides ATCC 17025 chromosome, complete genome

NCBI: NC_009428

Host Lineage: Rhodobacter sphaeroides; Rhodobacter; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: Bacteria belonging to the Rhodobacter group are metabolically versatile as they are able to grow using photosynthesis, chemosynthesis, and usually can grow under both anaerobic and aerobic conditions. It can grow aerobically and anaerobically in the light and anaerobically in the dark. It produces an intracytoplasmic membrane system consisting of membrane invaginations where the light harvesting complexes (LH1 and LH2) and the reaction center are synthesized.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
172587175209926229Island text2.0527821.820722.4522Neighbours11BLASTN+IslandViewer 725871.gbk
280757783078023204Island text1.4678815.108214.4963Neighbours11BLASTN+IslandViewer 807577.gbk
3833701*85697123271Island text1.447318.895912.7787Neighbours11BLASTN+IslandViewer 833701.gbk
41441877146209420218Island text1.8980716.432416.1302Neighbours11BLASTN+IslandViewer 1441877.gbk
51827352*187404346692Island text1.6224218.308915.8285Neighbours11BLASTN+IslandViewer 1827352.gbk