Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009379: Polynucleobacter sp. QLW-P1DMWA-1, complete genome

NCBI: NC_009379

Host Lineage: Polynucleobacter necessarius; Polynucleobacter; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This group of organisms is common in freshwater, comprising up to 60% of the bacteria in freshwater habitats. Polynucleobacter species are also known to be endosymbionts of ciliates. These strains live within the cytoplasm and are essential for their host organisms.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
130422232802123800Island text2.2434628.279624.3482Neighbours21BLASTN+304222.gbk
243540445957024167Island text1.4573828.489844.4086Neighbours21BLASTN+435404.gbk
31034740105427819539Island text1.4975727.121844.6096Neighbours21BLASTN1034740.gbk
41910891*193436123471Island text1.753529.60417.0018Neighbours21BLASTN+IslandViewer 1910891.gbk