Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009376: Pyrobaculum arsenaticum DSM 13514 chromosome, complete genome

NCBI: NC_009376

Host Lineage: Pyrobaculum arsenaticum; Pyrobaculum; Thermoproteaceae; Thermoproteales; Crenarchaeota; Archaea

General Information: Pyrobaculum arsenaticum strain DSM 13514 was isolated from a hot spring at Pisciarelli Solfatara in Italy. Arsenate-reducing hyperthermophile. Pyrobaculum arsenaticum is able to grow both chemolithoautotrophically, using hydrogen as the electron donor, to reduce arsenate, thiosulfate, or elemental sulfur, and organotrophically, using arsenate and thiosulfate as electron acceptors. Pyrobaculum arsenaticum may play an important role in the cycling of arsenic and sulfur in hyperthermal environments.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*2958129581Island text2.0222942.255726.8275BLASTN+1.gbk
237851*6971331863Island text1.5338838.047345.2021BLASTN37851.gbk
329650032159925100Island text3.0175347.832225.6985BLASTN296500.gbk
442000044235322354Island text1.5200734.010224.6132Neighbours61BLASTN420000.gbk
544622447249426271Island text1.4385236.496831.8918Neighbours63BLASTN446224.gbk
648330750750224196Island text1.6583737.448832.1471Neighbours62483307.gbk
776919979275323555Island text1.4861435.104641.7834Neighbours61BLASTN+769199.gbk
8794562*82522530664Island text2.9788448.52526.3772BLASTN+794562.gbk
983200085541423415Island text1.5208535.718644.4756Neighbours61BLASTN+832000.gbk
101291901*131433922439Island text1.605534.116650.9319Neighbours61BLASTN+1291901.gbk
111335074*135733922266Island text1.685736.336343.2196Neighbours61BLASTN+1335074.gbk
121442314*146391121598Island text1.6383434.906239.7498Neighbours63BLASTN+1442314.gbk
131465125*148833023206Island text2.1089539.60733.1371Neighbours63BLASTN1465125.gbk
141551630*157035018721Island text1.6324534.554425.2467Neighbours61BLASTN+1551630.gbk
151579332*160222522894Island text1.6627933.414444.9994Neighbours63+1579332.gbk
161633283*166170428422Island text1.7291739.963224.6836Neighbours61BLASTN+1633283.gbk
171699749*172267622928Island text1.5569734.265642.5509Neighbours61BLASTN+1699749.gbk
181764277*178602221746Island text1.7885135.308633.292Neighbours61BLASTN1764277.gbk
192074325*209544121117Island text1.8726434.991155.3985BLASTN+2074325.gbk
202102536*213399931464Island text1.7341439.441727.7216BLASTN2102536.gbk