Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009342: Corynebacterium glutamicum R chromosome, complete genome

NCBI: NC_009342

Host Lineage: Corynebacterium glutamicum; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from meadow soil in Japan. Soil bacterium with industrial uses. They may be found as members of the normal microflora of humans, where these bacteria find a suitable niche in virtually every anatomic site. This organism is a well-studied soil bacterium of considerable importance in biotechnology, in particular for the fermentative production of L-amino acids for food and fodder industry. The name was originaly given for this species for its ability to produce significant quantities (>100 g per liter) of glutamic acid (glutamate), an important food enhancer that has a meaty taste and flavor. C. glutamicum is currently used commercially to produce glutamate and other amino acids (L-lysine) and compounds. The first strain of the species was isolated in 1957 by S. Kinoshita and colleagues while searching for an efficient glutamate-producer.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113550016909933600Island text1.5841339.48450.4832Neighbours11BLASTNIslandViewer 135500.gbk
246421050347639267Island text1.6596536.045211.2028Neighbours13BLASTNIslandViewer 464210.gbk
358974161277923039Island text2.1682241.307834.5984Neighbours11BLASTNIslandViewer 589741.gbk
479550081923023731Island text1.5233432.149819.6918Neighbours13BLASTN795500.gbk
584150086469323194Island text1.8128739.629140.1286Neighbours13BLASTN841500.gbk
6951761*96976418004Island text1.624334.816632.4062Neighbours11BLASTN951761.gbk
71538000*156169223693Island text1.5909932.542854.6825Neighbours13BLASTN+IslandViewer 1538000.gbk
81570000159434924350Island text1.8898335.910923.8976Neighbours13BLASTN1570000.gbk
92076979209623919261Island text1.8192231.757742.3584Neighbours14IslandViewer 2076979.gbk
102211000223059919600Island text1.6318137.761435.8204Neighbours13BLASTNIslandViewer 2211000.gbk
112528426*254783719412Island text1.6570236.448253.8758BLASTNIslandViewer 2528426.gbk