Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009338: Mycobacterium gilvum PYR-GCK chromosome, complete genome

NCBI: NC_009338

Host Lineage: Mycobacterium gilvum; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This genus comprises a number of Gram-positive, acid-fast, rod-shaped aerobic bacteria and is the only member of the family Mycobacteriaceae within the order Actinomycetales. Like other closely related Actinomycetales, such as Nocardia and Corynebacterium, mycobacteria have unusually high genomic DNA GC content and are capable of producing mycolic acids as major components of their cell wall. These organism are common in soil and freshwater. Mycobacterium gilvum PYR-GCK was isolated from river sediment, Grand Calumet River in Northwestern Indiana, USA.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
155558760199946413Island text1.878318.476522.0459Neighbours11BLASTN+IslandViewer 555587.gbk
260366362614922487Island text1.6411713.855516.053Neighbours11BLASTN+IslandViewer 603663.gbk
363013067588245753Island text1.7578916.911920.2853Neighbours11BLASTN+IslandViewer 630130.gbk
468693271598529054Island text1.671515.856616.267Neighbours11BLASTN+IslandViewer 686932.gbk
5817854*84210924256Island text1.9148717.489122.3855Neighbours11BLASTNIslandViewer 817854.gbk
6912894*94187628983Island text1.9729617.188920.7505Neighbours11BLASTN+IslandViewer 912894.gbk
795519597741522221Island text1.6443816.732418.076Neighbours11BLASTNIslandViewer 955195.gbk
82042664*207441631753Island text1.924420.059625.2886Neighbours11BLASTN+IslandViewer 2042664.gbk
92925286297409948814Island text2.6559722.133229.4483Neighbours11BLASTN+IslandViewer 2925286.gbk
103029507304870919203Island text1.962717.619117.9121Neighbours11BLASTN+3029507.gbk
113359500340446144962Island text1.5566415.661516.1835Neighbours11BLASTN+IslandViewer 3359500.gbk
123410349342938519037Island text1.6915119.554917.6328Neighbours11BLASTN+IslandViewer 3410349.gbk
134869700490759237893Island text1.4491115.479117.4138Neighbours11BLASTN+IslandViewer 4869700.gbk
144913510494465231143Island text2.6696722.355330.4295Neighbours11BLASTN+IslandViewer 4913510.gbk
155052000508113129132Island text1.6081715.427314.1026Neighbours11BLASTN+IslandViewer 5052000.gbk
165161886*518675924874Island text1.6017418.358116.7727Neighbours11BLASTN+IslandViewer 5161886.gbk
175537473556287325401Island text1.8720414.617.5539Neighbours11BLASTNIslandViewer 5537473.gbk